C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134125 Sema6c-003 ENSMUSG00000038777 10090 + 3:95160505-95174024 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000134125
Transcript ID Adipose Brain Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000134125 0.897±0.47 7.724±2.82 0.308±0.00 0.323±0.05 0.119±0.03 0.455±0.00 2.035±0.95 0.389±0.25 1.091±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000581 CIL_000581_0003 CGP 3:95139521-95174024

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341697 SEMA6C-004 protein_coding Homo_sapiens 0 939
ENST00000368912 SEMA6C-003 protein_coding Homo_sapiens 0 1838
ENST00000368913 SEMA6C-002 protein_coding Homo_sapiens 0 1838
ENST00000368914 SEMA6C-001 protein_coding Homo_sapiens 0 939
ENST00000464018 SEMA6C-006 processed_transcript Homo_sapiens 0 374
ENST00000479820 SEMA6C-005 processed_transcript Homo_sapiens 0 195
ENST00000485745 SEMA6C-008 processed_transcript Homo_sapiens 1e-27 126
ENST00000613223 SEMA6C-201 protein_coding Homo_sapiens 0 566
ENST00000621728 SEMA6C-202 protein_coding Homo_sapiens 0 566

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