C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ryanodine receptor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134358 Ryr3-002 ENSMUSG00000057378 10090 - 2:112632046-113217068 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartLungOvaryENSMUST00000134358
Transcript ID Adipose Colon Heart Lung Ovary
ENSMUST00000134358 0.841±0.33 0.323±0.19 0.172±0.00 0.156±0.00 0.449±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HM CIL_0003HM_0002 CGP 2:112479171-112634573
CIL_000222 CIL_000222_0002 CGP 2:112492964-113217096

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000014749 ryr1a-201 protein_coding Danio_rerio 0 723
ENSDART00000137089 ryr1a-001 protein_coding Danio_rerio 0 723
ENSDART00000122570 protein_coding Danio_rerio 0 599
ENST00000389232 RYR3-001 protein_coding Homo_sapiens 0 18450
ENST00000415757 RYR3-002 protein_coding Homo_sapiens 0 18530
ENST00000558060 RYR3-004 retained_intron Homo_sapiens 0 473
ENST00000559333 RYR3-007 processed_transcript Homo_sapiens 0 501
ENST00000559917 RYR3-006 processed_transcript Homo_sapiens 0 833
ENST00000560791 RYR3-005 retained_intron Homo_sapiens 0 579
ENST00000622037 RYR3-201 protein_coding Homo_sapiens 0 13480

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