C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha thalassemia/mental retardation syndrome X-linked homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134381 Atrx-015 ENSMUSG00000031229 10090 - X:105877241-105929206 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YN CIL_0001YN_0002 CGP X:105764279-105929397
CIL_0001YT CIL_0001YT_0002 CGP X:105797615-106011906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000792 IDA heterochromatin
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007283 IMP spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0030900 IMP forebrain development
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0060009 IMP Sertoli cell development
GO:0072520 IMP seminiferous tubule development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373344 ATRX-001 protein_coding Homo_sapiens 0 693
ENST00000395603 ATRX-002 protein_coding Homo_sapiens 0 950
ENST00000480283 ATRX-003 nonsense_mediated_decay Homo_sapiens 0 689
ENST00000622960 ATRX-012 protein_coding Homo_sapiens 1e-20 104
ENST00000623321 ATRX-009 protein_coding Homo_sapiens 0 693
ENST00000624032 ATRX-004 protein_coding Homo_sapiens 0 693
ENST00000624166 ATRX-010 protein_coding Homo_sapiens 0 931
ENST00000624668 ATRX-013 protein_coding Homo_sapiens 0 425
ENST00000625063 ATRX-015 protein_coding Homo_sapiens 0 420

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