C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134415 Sgms1-007 ENSMUSG00000040451 10090 - 19:32124147-32160223 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000134415
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000134415 4.054±0.00 7.915±1.48 6.943±0.00 4.335±0.66 5.936±1.69 4.105±0.00 2.336±1.15 12.671±4.56 8.540±4.48 54.907±12.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IG CIL_0000IG_0002 CGP 19:31984654-32389714

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000138 ISA Golgi trans cisterna
GO:2001237 IDA negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361543 SGMS1-201 protein_coding Homo_sapiens 0 998
ENST00000361781 SGMS1-003 protein_coding Homo_sapiens 0 1162
ENST00000429490 SGMS1-202 protein_coding Homo_sapiens 0 998
ENST00000602619 SGMS1-005 protein_coding Homo_sapiens 0 411
ENST00000619438 SGMS1-203 protein_coding Homo_sapiens 0 998

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