C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429490 SGMS1-202 ENSG00000198964 9606 - 10:50305586-50623977 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungOvaryTestisENST00000429490
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Ovary Testis
ENST00000429490 1.554±0.00 3.057±0.20 1.538±0.36 0.812±0.00 2.784±0.00 1.240±0.46 2.613±0.00 1.567±0.00 1.888±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IG CIL_0000IG_0001 CGP 10:50182778-50625163

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000142618 Sgms1-002 protein_coding Mus_musculus 0 2056
ENSMUST00000099514 Sgms1-001 protein_coding Mus_musculus 0 2056
ENSMUST00000151289 Sgms1-004 protein_coding Mus_musculus 0 1587
ENSMUST00000152340 Sgms1-003 nonsense_mediated_decay Mus_musculus 0 1140
ENSMUST00000124012 Sgms1-005 retained_intron Mus_musculus 0 1138
ENSMUST00000134415 Sgms1-007 nonsense_mediated_decay Mus_musculus 0 998
ENSMUST00000151822 Sgms1-014 protein_coding Mus_musculus 0 315

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