C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule-actin crosslinking factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134458 Macf1-008 ENSMUSG00000028649 10090 - 4:123349716-123499917 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaENSMUST00000134458
Transcript ID Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta
ENSMUST00000134458 1.860±0.41 8.727±3.75 4.394±0.00 1.743±0.38 1.446±0.00 0.909±0.00 0.774±0.11 4.535±1.82 6.930±2.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000990 CIL_000990_0002 VISTA 4:123304867-123907516
CIL_0001ZU CIL_0001ZU_0002 CGP 4:123349633-123718202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001707 IMP mesoderm formation
GO:0003779 IDA actin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0006200 IEA ATP catabolic process
GO:0006620 IMP posttranslational protein targeting to membrane
GO:0006928 IMP cellular component movement
GO:0007050 IEA cell cycle arrest
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0008017 IDA microtubule binding
GO:0015629 IDA actin cytoskeleton
GO:0015630 IDA microtubule cytoskeleton
GO:0016055 IGI Wnt signaling pathway
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054274 macf1-201 protein_coding Danio_rerio 0 448
ENSDART00000146394 macf1-001 protein_coding Danio_rerio 0 448
ENST00000289893 MACF1-005 protein_coding Homo_sapiens 0 8508
ENST00000360115 MACF1-010 protein_coding Homo_sapiens 0 3181
ENST00000361689 MACF1-001 protein_coding Homo_sapiens 0 8586
ENST00000372915 MACF1-028 protein_coding Homo_sapiens 0 12510
ENST00000372925 MACF1-003 protein_coding Homo_sapiens 0 17140
ENST00000422234 MACF1-024 protein_coding Homo_sapiens 0 291
ENST00000442046 MACF1-007 protein_coding Homo_sapiens 0 1725
ENST00000446276 MACF1-011 protein_coding Homo_sapiens 0 1725
ENST00000462103 MACF1-026 processed_transcript Homo_sapiens 0 268
ENST00000462496 MACF1-023 processed_transcript Homo_sapiens 0 575
ENST00000469490 MACF1-021 processed_transcript Homo_sapiens 0 1009
ENST00000473843 MACF1-020 processed_transcript Homo_sapiens 0 422
ENST00000476350 MACF1-004 processed_transcript Homo_sapiens 0 4634
ENST00000482035 MACF1-025 protein_coding Homo_sapiens 0 1007
ENST00000487656 MACF1-022 processed_transcript Homo_sapiens 0 233
ENST00000496360 MACF1-006 processed_transcript Homo_sapiens 0 937
ENST00000496804 MACF1-002 nonsense_mediated_decay Homo_sapiens 0 1941
ENST00000497807 MACF1-008 processed_transcript Homo_sapiens 0 1592
ENST00000497964 MACF1-009 processed_transcript Homo_sapiens 0 761
ENST00000524432 MACF1-030 protein_coding Homo_sapiens 0 1912
ENST00000530262 MACF1-029 protein_coding Homo_sapiens 0 3245
ENST00000564288 MACF1-032 protein_coding Homo_sapiens 0 6536
ENST00000567887 MACF1-031 protein_coding Homo_sapiens 0 6536

Loading