C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134767 Synj2-002 ENSMUSG00000023805 10090 + 17:5941378-6039390 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000134767
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000134767 1.092±0.00 2.664±0.00 4.827±0.00 0.985±0.18 1.450±0.00 2.324±0.07 0.343±0.03 0.191±0.00 1.700±0.08 1.090±0.00 1.439±0.57 0.665±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055D CIL_00055D_0002 CGP 17:5841328-6044290
CIL_00055M CIL_00055M_0002 CGP 17:5941280-6079741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004439 IDA phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0016311 IDA dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355585 SYNJ2-002 protein_coding Homo_sapiens 0 3507
ENST00000367112 SYNJ2-003 protein_coding Homo_sapiens 0 1094
ENST00000367122 SYNJ2-201 protein_coding Homo_sapiens 0 1853
ENST00000485863 SYNJ2-001 nonsense_mediated_decay Homo_sapiens 0 525

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