C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cystathionine beta-synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135425 Cbs-005 ENSMUSG00000024039 10090 - 17:31625131-31636649 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000135425
Transcript ID Muscle
ENSMUST00000135425 0.061±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_0000D3 CIL_0000D3_0002 CGP 17:31564749-31637199
CIL_0000MQ CIL_0000MQ_0004 CGP 17:31612623-31658754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001958 IMP endochondral ossification
GO:0001974 IMP blood vessel remodeling
GO:0004122 IMP cystathionine beta-synthase activity
GO:0006535 IEA cysteine biosynthetic process from serine
GO:0006801 IMP superoxide metabolic process
GO:0019344 IMP cysteine biosynthetic process
GO:0021587 IMP cerebellum morphogenesis
GO:0030823 IMP regulation of cGMP metabolic process
GO:0043506 IMP regulation of JUN kinase activity
GO:0050667 IMP homocysteine metabolic process
GO:0050880 IMP regulation of blood vessel size
GO:0051593 IMP response to folic acid
GO:0060135 IMP maternal process involved in female pregnancy
GO:0060351 IMP cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352178 CBS-001 protein_coding Homo_sapiens 0 372
ENST00000359624 CBS-002 protein_coding Homo_sapiens 0 372
ENST00000398158 CBS-004 protein_coding Homo_sapiens 0 372
ENST00000398165 CBS-003 protein_coding Homo_sapiens 0 372
ENST00000398168 CBS-001 protein_coding Homo_sapiens 0 372
ENST00000441030 CBS-007 protein_coding Homo_sapiens 0 370
ENST00000465732 CBS-009 processed_transcript Homo_sapiens 9e-32 141
ENST00000470912 CBS-008 processed_transcript Homo_sapiens 1e-31 141
ENST00000488526 CBS-010 processed_transcript Homo_sapiens 9e-32 141
ENST00000617706 CBS-201 protein_coding Homo_sapiens 0 372
ENST00000618024 CBS-002 protein_coding Homo_sapiens 0 372
ENST00000623939 CBS-007 processed_transcript Homo_sapiens 0 333
ENST00000624406 CBS-009 protein_coding Homo_sapiens 0 372
ENST00000624921 CBS-008 processed_transcript Homo_sapiens 1e-31 141
ENST00000624934 CBS-004 protein_coding Homo_sapiens 0 372

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