C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cystathionine-beta-synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398158 CBS-004 ENSG00000160200 9606 - 21:43053191-43075831 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryPlacentaENST00000398158
Transcript ID Bladder Ovary Placenta
ENST00000398158 0.022±0.00 0.385±0.00 0.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D3 CIL_0000D3_0001 CGP 21:42974510-43076943
CIL_0000MQ CIL_0000MQ_0002 CGP 21:43053191-43107587

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000096 TAS sulfur amino acid metabolic process
GO:0004122 IDA:IEA cystathionine beta-synthase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006535 IEA cysteine biosynthetic process from serine
GO:0006563 IDA L-serine metabolic process
GO:0006565 IDA L-serine catabolic process
GO:0019343 IEA cysteine biosynthetic process via cystathionine
GO:0019346 TAS transsulfuration
GO:0019448 IDA L-cysteine catabolic process
GO:0019899 IPI enzyme binding
GO:0020037 IMP heme binding
GO:0030170 IDA pyridoxal phosphate binding
GO:0030554 IEA adenyl nucleotide binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042802 IPI identical protein binding
GO:0042803 IDA protein homodimerization activity
GO:0043418 IDA homocysteine catabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0050667 IDA homocysteine metabolic process
GO:0070814 ISS hydrogen sulfide biosynthetic process
GO:0072341 IDA modified amino acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078509 Cbs-002 protein_coding Mus_musculus 0 1495
ENSMUST00000118504 Cbs-003 protein_coding Mus_musculus 0 1495
ENSMUST00000067801 Cbs-001 protein_coding Mus_musculus 0 1424
ENSMUST00000128351 Cbs-006 processed_transcript Mus_musculus 0 789
ENSMUST00000155814 Cbs-004 protein_coding Mus_musculus 0 448
ENSMUST00000135425 Cbs-005 protein_coding Mus_musculus 0 372

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