C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000D3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000160199-ENSG00000160200 CGP 9606 21:42974510-43076943
GeneTranscriptPositionBiotype
ENSG00000160199 (PKNOX1)
PBX/knotted 1 homeobox 1 		ENST00000291547 (PKNOX1-001) 42974510-43033582 protein_coding
ENST00000418336 (PKNOX1-006) 42974535-43007712 retained_intron
ENST00000432907 (PKNOX1-201) 42974510-43033931 protein_coding
ENST00000456957 (PKNOX1-007) 43003889-43007515 retained_intron
ENST00000474336 (PKNOX1-003) 43021151-43028781 retained_intron
ENST00000480179 (PKNOX1-002) 42974662-43018051 retained_intron
ENST00000557820 (PKNOX1-008) 43020451-43029949 processed_transcript
ENST00000558955 (PKNOX1-009) 43024817-43030214 retained_intron
ENST00000560448 (PKNOX1-005) 43004322-43030331 nonsense_mediated_decay
ENST00000607049 (PKNOX1-011) 43018131-43030162 retained_intron
ENST00000607150 (PKNOX1-010) 43024435-43028875 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0000D3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006705-ENSMUSG00000024039 CGP 10090 17:31564749-31637199
GeneTranscriptPositionBiotype
ENSMUSG00000006705 (Pknox1)
Pbx/knotted 1 homeobox 		ENSMUST00000097352 (Pknox1-001) 31564801-31607680 protein_coding
ENSMUST00000175709 (Pknox1-005) 31591732-31592158 processed_transcript
ENSMUST00000175806 (Pknox1-003) 31564749-31605481 protein_coding
ENSMUST00000175812 (Pknox1-006) 31594821-31599601 retained_intron
ENSMUST00000176513 (Pknox1-007) 31602738-31603584 retained_intron
ENSMUST00000176701 (Pknox1-004) 31583552-31607684 protein_coding
ENSMUST00000176895 (Pknox1-002) 31564759-31590076 retained_intron
ENSMUSG00000024039 (Cbs)
cystathionine beta-synthase 		ENSMUST00000067801 (Cbs-001) 31612623-31637199 protein_coding
ENSMUST00000078509 (Cbs-002) 31612641-31637165 protein_coding
ENSMUST00000118504 (Cbs-003) 31612640-31637165 protein_coding
ENSMUST00000128351 (Cbs-006) 31620947-31626188 processed_transcript
ENSMUST00000135425 (Cbs-005) 31625131-31636649 protein_coding
ENSMUST00000143982 (Cbs-007) 31621472-31623058 processed_transcript
ENSMUST00000151597 (Cbs-008) 31617165-31617873 retained_intron
ENSMUST00000151718 (Cbs-009) 31627525-31636649 protein_coding
ENSMUST00000155814 (Cbs-004) 31625077-31636790 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000D3_0001ENSG00000160199ENST00000291547ENST00000418336ENST00000432907ENST00000456957ENST00000474336ENST00000480179ENST00000557820ENST00000558955ENST00000560448ENST00000607049ENST00000607150CIL_0000D3_0002ENSMUSG00000006705ENSMUST00000097352ENSMUST00000175709ENSMUST00000175806ENSMUST00000175812ENSMUST00000176513ENSMUST00000176701ENSMUST00000176895ENSMUSG00000024039ENSMUST00000067801ENSMUST00000078509ENSMUST00000118504ENSMUST00000128351ENSMUST00000135425ENSMUST00000143982ENSMUST00000151597ENSMUST00000151718ENSMUST00000155814
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000D3_0001ENSG00000160199ENST00000291547ENST00000418336ENST00000432907ENST00000474336ENST00000480179ENST00000557820ENST00000558955ENST00000560448ENST00000607049CIL_0000D3_0002ENSMUSG00000006705ENSMUST00000097352ENSMUST00000175806ENSMUST00000176701ENSMUST00000176895ENSMUSG00000024039ENSMUST00000067801ENSMUST00000078509ENSMUST00000118504ENSMUST00000128351ENSMUST00000135425ENSMUST00000151597ENSMUST00000155814
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000160199 ENST00000291547 2.049±0.00 2.789±0.00 1.057±0.00 1.702±0.03 1.278±0.08 2.075±1.11 0.821±0.34 1.445±1.10 1.350±0.21 2.082±0.00 1.310±0.74 3.368±1.21 2.380±0.55 5.726±0.67
ENST00000418336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.168±0.00
ENST00000432907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.698±0.05 N/A N/A
ENST00000456957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474336 N/A N/A N/A N/A N/A N/A 1.894±0.00 2.824±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480179 N/A N/A N/A N/A 0.595±0.00 N/A N/A 0.610±0.00 N/A 1.039±0.00 N/A N/A N/A N/A
ENST00000557820 N/A N/A N/A N/A N/A 2.417±0.00 N/A N/A 2.865±0.00 N/A N/A N/A N/A N/A
ENST00000558955 N/A N/A N/A N/A 2.413±0.00 N/A 0.921±0.00 N/A 3.361±0.00 N/A 1.129±0.00 N/A N/A N/A
ENST00000560448 N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A 1.048±0.00 N/A 2.100±0.05 8.612±0.00
ENST00000607049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.510±0.00
ENST00000607150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006705 ENSMUST00000097352 5.560±2.04 3.493±0.39 5.786±0.11 6.816±3.41 4.937±0.89 3.393±1.12 2.015±0.35 4.324±0.71 3.178±0.70 4.655±0.73 2.236±0.24 6.016±1.22 5.709±0.75 6.603±2.42
ENSMUST00000175709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175806 4.181±2.16 3.326±0.42 1.782±0.00 N/A 4.095±0.34 4.484±0.66 1.229±0.20 2.309±0.60 1.574±0.56 3.856±0.48 N/A 9.835±1.82 2.178±0.02 6.546±1.89
ENSMUST00000175812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176701 N/A N/A 1.114±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.451±0.88 N/A N/A
ENSMUSG00000024039 ENSMUST00000067801 1.320±0.21 0.318±0.21 N/A 1.119±0.97 0.634±0.04 14.974±3.47 0.156±0.08 21.062±2.95 115.893±91.14 0.791±0.21 0.065±0.03 23.266±10.85 0.267±0.17 0.746±0.25
ENSMUST00000078509 2.381±1.14 0.336±0.11 0.361±0.08 1.213±0.47 1.224±0.47 12.086±4.63 0.118±0.01 30.398±11.46 84.126±77.45 1.222±0.37 0.060±0.05 47.489±8.86 0.130±0.07 0.828±0.83
ENSMUST00000118504 0.739±0.00 0.119±0.00 0.089±0.00 N/A 0.558±0.00 5.131±1.31 0.145±0.00 6.275±0.62 21.914±20.33 0.457±0.00 0.040±0.01 10.649±0.47 0.097±0.03 0.481±0.38
ENSMUST00000128351 N/A N/A N/A 17.711±0.00 N/A N/A 0.307±0.09 N/A N/A N/A N/A 62.377±0.00 0.481±0.20 0.161±0.00
ENSMUST00000135425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.03 N/A N/A N/A
ENSMUST00000143982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.123±0.01 N/A 0.166±0.00 N/A
ENSMUST00000151718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.03 16.102±0.00 0.258±0.00 N/A

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