C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136049 Syt6-006 ENSMUSG00000027849 10090 + 3:103575300-103632768 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLungOvaryTestisENSMUST00000136049
Transcript ID Breast Colon Lung Ovary Testis
ENSMUST00000136049 0.024±0.00 0.663±0.15 0.180±0.07 0.462±0.26 0.044±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X0 CIL_0006X0_0002 CGP 3:103575231-103738001

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369547 SYT6-201 protein_coding Homo_sapiens 0 2289
ENST00000607941 SYT6-001 protein_coding Homo_sapiens 0 2021
ENST00000608203 SYT6-006 protein_coding Homo_sapiens 0 846
ENST00000609117 SYT6-007 protein_coding Homo_sapiens 0 2017
ENST00000610096 SYT6-002 nonsense_mediated_decay Homo_sapiens 0 2289
ENST00000610121 SYT6-003 nonsense_mediated_decay Homo_sapiens 0 1938
ENST00000610222 SYT6-004 protein_coding Homo_sapiens 0 1736

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