C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137732 Apba2-005 ENSMUSG00000030519 10090 + 7:64502138-64695371 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaENSMUST00000137732
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENSMUST00000137732 0.337±0.03 0.229±0.10 0.167±0.04 1.002±0.25 0.412±0.21 0.157±0.05 0.653±0.01 0.226±0.00 2.369±0.85 0.117±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CR CIL_0007CR_0002 CGP 7:64392645-64753870
CIL_0006HE CIL_0006HE_0002 CGP 7:64501706-65156570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IGI in utero embryonic development
GO:0005515 IPI protein binding
GO:0007268 IGI synaptic transmission
GO:0007626 IGI locomotory behavior
GO:0010468 IGI regulation of gene expression
GO:0035264 IGI multicellular organism growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000411764 APBA2-201 protein_coding Homo_sapiens 0 387
ENST00000558259 APBA2-202 protein_coding Homo_sapiens 0 387
ENST00000558330 APBA2-002 protein_coding Homo_sapiens 0 387
ENST00000558358 APBA2-011 protein_coding Homo_sapiens 0 357
ENST00000558402 APBA2-001 protein_coding Homo_sapiens 0 387
ENST00000559709 APBA2-007 protein_coding Homo_sapiens 0.0000000001 71
ENST00000559814 APBA2-003 retained_intron Homo_sapiens 0 387
ENST00000560283 APBA2-009 protein_coding Homo_sapiens 0 381
ENST00000561069 APBA2-004 protein_coding Homo_sapiens 0 381
ENST00000612449 APBA2-203 protein_coding Homo_sapiens 0 387
ENST00000620457 APBA2-204 protein_coding Homo_sapiens 0 387

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