C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138036 Prpf40b-005 ENSMUSG00000023007 10090 + 15:99295241-99316114 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000138036
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000138036 2.636±1.04 4.657±1.61 2.908±0.86 2.057±0.61 1.116±0.09 1.742±0.37 0.980±0.39 2.894±0.58 1.470±0.01 6.324±2.01 0.885±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261897 PRPF40B-002 protein_coding Homo_sapiens 0 2109
ENST00000335154 FMNL3-002 protein_coding Homo_sapiens 0 590
ENST00000380281 PRPF40B-001 protein_coding Homo_sapiens 0 2261
ENST00000546626 PRPF40B-014 retained_intron Homo_sapiens 0 894
ENST00000548399 PRPF40B-012 retained_intron Homo_sapiens 0 545
ENST00000548436 PRPF40B-009 retained_intron Homo_sapiens 0 789
ENST00000548825 PRPF40B-019 protein_coding Homo_sapiens 0 2261
ENST00000549547 PRPF40B-016 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000551111 PRPF40B-011 retained_intron Homo_sapiens 0 689
ENST00000551269 PRPF40B-017 retained_intron Homo_sapiens 0 250
ENST00000551418 PRPF40B-010 retained_intron Homo_sapiens 0 446

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