C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitination factor E4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253251 UBE4B-002 ENSG00000130939 9606 + 1:10032832-10180367 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253251
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253251 3.569±0.00 2.560±0.00 3.644±2.13 2.926±0.00 2.316±1.55 3.467±0.00 1.761±0.45 1.323±0.00 6.791±0.00 6.103±3.15 4.410±3.30 4.285±1.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 TAS:IEA ubiquitin ligase complex
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005737 ISS cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008626 IDA granzyme-mediated apoptotic signaling pathway
GO:0009411 IDA response to UV
GO:0016567 IEA protein ubiquitination
GO:0019899 ISS enzyme binding
GO:0034450 IEA ubiquitin-ubiquitin ligase activity
GO:0042787 TAS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103212 Ube4b-001 protein_coding Mus_musculus 0 5182
ENSMUST00000172836 Ube4b-012 nonsense_mediated_decay Mus_musculus 0 3823
ENSMUST00000174343 Ube4b-011 nonsense_mediated_decay Mus_musculus 0 2944
ENSMUST00000084123 Ube4b-003 retained_intron Mus_musculus 0 2259
ENSMUST00000172643 Ube4b-010 processed_transcript Mus_musculus 0 597
ENSMUST00000173005 Ube4b-009 retained_intron Mus_musculus 0 592
ENSMUST00000138181 Ube4b-002 nonsense_mediated_decay Mus_musculus 0 462
ENSMUST00000155968 Ube4b-007 processed_transcript Mus_musculus 0 457
ENSMUST00000131986 Ube4b-004 processed_transcript Mus_musculus 0 278
ENSMUST00000136732 Ube4b-008 retained_intron Mus_musculus 0 226

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