C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitination factor E4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343090 UBE4B-001 ENSG00000130939 9606 + 1:10033596-10181239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000343090
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000343090 0.943±0.00 1.198±0.00 1.273±0.51 2.370±0.00 4.769±2.83 0.797±0.20 1.449±0.00 6.698±4.83 5.751±0.88 2.564±0.00 1.041±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 TAS:IEA ubiquitin ligase complex
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005737 ISS cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008626 IDA granzyme-mediated apoptotic signaling pathway
GO:0009411 IDA response to UV
GO:0016567 IEA protein ubiquitination
GO:0019899 ISS enzyme binding
GO:0034450 IEA ubiquitin-ubiquitin ligase activity
GO:0042787 TAS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103212 Ube4b-001 protein_coding Mus_musculus 0 3807
ENSMUST00000174343 Ube4b-011 nonsense_mediated_decay Mus_musculus 0 2944
ENSMUST00000172836 Ube4b-012 nonsense_mediated_decay Mus_musculus 0 2802
ENSMUST00000084123 Ube4b-003 retained_intron Mus_musculus 0 1123
ENSMUST00000138181 Ube4b-002 nonsense_mediated_decay Mus_musculus 0 462
ENSMUST00000155968 Ube4b-007 processed_transcript Mus_musculus 0 457
ENSMUST00000173005 Ube4b-009 retained_intron Mus_musculus 0 409
ENSMUST00000131986 Ube4b-004 processed_transcript Mus_musculus 0 278
ENSMUST00000172643 Ube4b-010 processed_transcript Mus_musculus 0 267
ENSMUST00000136732 Ube4b-008 retained_intron Mus_musculus 0 226

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