C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138350 Gabrb3-004 ENSMUSG00000033676 10090 + 7:57591530-57816370 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverOvaryTestisENSMUST00000138350
Transcript ID Adrenal Colon Liver Ovary Testis
ENSMUST00000138350 0.677±0.09 0.163±0.00 0.324±0.10 0.460±0.00 0.903±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LH CIL_0006LH_0002 CGP 7:57407690-57828802
CIL_0007CV CIL_0007CV_0002 CGP 7:57590518-58829426

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 ISO GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005886 IDA plasma membrane
GO:0007214 ISO gamma-aminobutyric acid signaling pathway
GO:0016021 IEA integral component of membrane
GO:0034220 IEA ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299267 GABRB3-001 protein_coding Homo_sapiens 0 553
ENST00000311550 GABRB3-002 protein_coding Homo_sapiens 0 553
ENST00000400188 GABRB3-006 protein_coding Homo_sapiens 0 366
ENST00000541819 GABRB3-003 protein_coding Homo_sapiens 0 553
ENST00000545868 GABRB3-004 protein_coding Homo_sapiens 0 364
ENST00000554556 GABRB3-009 nonsense_mediated_decay Homo_sapiens 0 189
ENST00000554722 GABRB3-008 processed_transcript Homo_sapiens 0 191
ENST00000555094 GABRB3-011 protein_coding Homo_sapiens 0 366
ENST00000555632 GABRB3-012 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000556166 GABRB3-005 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000556636 GABRB3-013 nonsense_mediated_decay Homo_sapiens 8e-36 154
ENST00000557641 GABRB3-010 processed_transcript Homo_sapiens 0 189
ENST00000622697 GABRB3-201 protein_coding Homo_sapiens 0 364

Loading