C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, beta 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311550 GABRB3-002 ENSG00000166206 9606 - 15:26543546-26773074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonMuscleOvaryPlacentaENST00000311550
Transcript ID Brain Breast Colon Muscle Ovary Placenta
ENST00000311550 12.650±0.72 0.033±0.02 0.243±0.06 0.010±0.00 0.395±0.00 0.041±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA:IMP GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 IMP integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007165 IEA:TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0007605 IEA sensory perception of sound
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0022851 ISS GABA-gated chloride ion channel activity
GO:0030054 IEA cell junction
GO:0034220 IEA:TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0043523 IEA regulation of neuron apoptotic process
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0045211 IEA postsynaptic membrane
GO:0048666 IEA neuron development
GO:0055085 TAS transmembrane transport
GO:0060021 ISS palate development
GO:0060119 IEA inner ear receptor cell development
GO:0060384 IEA innervation
GO:0071420 IDA cellular response to histamine
GO:0090102 IEA cochlea development
GO:1901215 IEA negative regulation of neuron death
GO:1902476 ISS chloride transmembrane transport
GO:1902711 ISS GABA-A receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039697 Gabrb3-001 protein_coding Mus_musculus 0 3469
ENSMUST00000085240 Gabrb3-002 protein_coding Mus_musculus 0 3195
ENSMUST00000156375 Gabrb3-003 retained_intron Mus_musculus 0 905
ENSMUST00000007797 Gabrb2-001 protein_coding Mus_musculus 0 673
ENSDART00000020215 GABRB2 (1 of 2)-201 protein_coding Danio_rerio 0 573
ENSMUST00000138350 Gabrb3-004 protein_coding Mus_musculus 0 553
ENSMUST00000136033 Gabrb3-005 retained_intron Mus_musculus 0 425

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