C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007CV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000023771-ENSDARG00000061039 CGP 7955 6:38312821-38657266
GeneTranscriptPositionBiotype
ENSDARG00000023771 (gabrb3)
gamma-aminobutyric acid (GABA) A receptor, beta 3 		ENSDART00000087300 (gabrb3-001) 38312821-38444389 protein_coding
ENSDART00000148678 (gabrb3-002) 38358221-38407825 protein_coding
ENSDARG00000061039 (atp10a)
ATPase, class V, type 10A 		ENSDART00000086533 (atp10a-001) 38557548-38657266 protein_coding
ENSDARG00000070730 (gabra5)
gamma-aminobutyric acid (GABA) A receptor, alpha 5 		ENSDART00000104135 (gabra5-201) 38297800-38349412 protein_coding
ENSDART00000138026 (gabra5-001) 38297800-38350182 protein_coding
ENSDART00000144106 (gabra5-002) 38297960-38357806 processed_transcript
CIL_0007CV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033676-ENSMUSG00000025324 CGP 10090 7:57590518-58829426
GeneTranscriptPositionBiotype
ENSMUSG00000025324 (Atp10a)
ATPase, class V, type 10A 		ENSMUST00000168747 (Atp10a-201) 58658202-58829426 protein_coding
ENSMUSG00000033676 (Gabrb3)
gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 		ENSMUST00000039697 (Gabrb3-001) 57591162-57828802 protein_coding
ENSMUST00000085240 (Gabrb3-002) 57590518-57828802 protein_coding
ENSMUST00000136033 (Gabrb3-005) 57792128-57816315 retained_intron
ENSMUST00000138350 (Gabrb3-004) 57591530-57816370 protein_coding
ENSMUST00000156375 (Gabrb3-003) 57591162-57765781 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CV_0001ENSDARG00000023771ENSDART00000087300ENSDART00000148678ENSDARG00000061039ENSDART00000086533ENSDARG00000070730ENSDART00000104135ENSDART00000138026ENSDART00000144106CIL_0007CV_0002ENSMUSG00000025324ENSMUST00000168747ENSMUSG00000033676ENSMUST00000039697ENSMUST00000085240ENSMUST00000136033ENSMUST00000138350ENSMUST00000156375
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CV_0001ENSDARG00000023771ENSDART00000087300ENSDART00000148678ENSDARG00000061039ENSDART00000086533ENSDARG00000070730ENSDART00000104135ENSDART00000138026CIL_0007CV_0002ENSMUSG00000025324ENSMUST00000168747ENSMUSG00000033676ENSMUST00000039697ENSMUST00000085240ENSMUST00000136033ENSMUST00000138350ENSMUST00000156375
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000023771 ENSDART00000087300 N/A N/A N/A 5.738±1.98 N/A N/A 0.485±0.40 0.079±0.04 N/A N/A N/A N/A N/A N/A
ENSDART00000148678 N/A N/A N/A 12.144±0.00 N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSDARG00000061039 ENSDART00000086533 N/A N/A N/A 0.472±0.28 N/A N/A 0.327±0.03 N/A 0.038±0.00 N/A 0.191±0.00 N/A N/A N/A
ENSDARG00000070730 ENSDART00000104135 N/A N/A N/A N/A N/A N/A 0.247±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138026 N/A N/A N/A 10.052±0.00 N/A N/A 0.059±0.00 N/A N/A N/A 0.883±0.00 N/A N/A N/A
ENSDART00000144106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025324 ENSMUST00000168747 5.784±1.06 20.195±1.87 4.856±0.22 0.761±0.29 2.848±1.01 2.673±0.64 0.583±0.19 0.752±0.11 0.328±0.23 5.400±0.55 0.351±0.14 11.116±2.46 1.955±1.19 7.857±6.37
ENSMUSG00000033676 ENSMUST00000039697 0.077±0.10 0.408±0.22 0.069±0.03 12.873±2.81 0.008±0.01 0.119±0.03 0.013±0.01 2.187±0.32 0.039±0.02 0.062±0.00 0.006±0.00 0.125±0.05 0.025±0.01 0.199±0.02
ENSMUST00000085240 0.070±0.09 N/A 0.081±0.00 4.156±0.43 0.015±0.01 0.145±0.02 0.033±0.02 0.402±0.00 0.034±0.02 0.019±0.00 0.006±0.00 0.129±0.04 0.045±0.02 0.092±0.01
ENSMUST00000136033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.06 0.088±0.00 N/A
ENSMUST00000138350 N/A 0.677±0.09 N/A N/A N/A 0.163±0.00 N/A N/A 0.324±0.10 N/A N/A 0.460±0.00 N/A 0.903±0.00
ENSMUST00000156375 0.653±0.00 1.620±0.29 N/A N/A N/A 0.220±0.05 N/A 1.553±0.00 0.136±0.00 0.057±0.01 N/A 0.427±0.21 N/A N/A

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