C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase mitochondrial F1 complex assembly factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138696 Atpaf2-003 ENSMUSG00000042709 10090 - 11:60403837-60417042 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000138696
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000138696 16.026±0.00 14.823±6.47 15.371±9.17 25.031±11.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DY CIL_0000DY_0002 CGP 11:60353329-60418457
CIL_0000DZ CIL_0000DZ_0002 CGP 11:60400626-60450927

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000444058 ATPAF2-015 protein_coding Homo_sapiens 0 621
ENST00000462733 ATPAF2-003 nonsense_mediated_decay Homo_sapiens 0.000000000002 79
ENST00000469327 ATPAF2-008 processed_transcript Homo_sapiens 0 202
ENST00000474627 ATPAF2-001 protein_coding Homo_sapiens 0 763
ENST00000488753 ATPAF2-007 retained_intron Homo_sapiens 0 473
ENST00000496852 ATPAF2-004 retained_intron Homo_sapiens 0 342
ENST00000497871 ATPAF2-006 retained_intron Homo_sapiens 0 292
ENST00000577586 ATPAF2-012 processed_transcript Homo_sapiens 0 292
ENST00000584205 ATPAF2-020 nonsense_mediated_decay Homo_sapiens 0.000000000001 79
ENST00000585101 ATPAF2-013 protein_coding Homo_sapiens 0.0000000000006 79

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