C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase mitochondrial F1 complex assembly factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462733 ATPAF2-003 ENSG00000171953 9606 - 17:18015059-18039075 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyOvaryENST00000462733
Transcript ID Bladder Brain Breast Kidney Ovary
ENST00000462733 0.681±0.00 2.315±0.00 0.726±0.14 1.650±0.00 1.812±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0002 CGP 17:17843511-18016889
CIL_0000DY CIL_0000DY_0001 CGP 17:17972813-18039209
CIL_0000DZ CIL_0000DZ_0001 CGP 17:17977409-18068404

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156966 Atpaf2-006 retained_intron Mus_musculus 2e-26 124
ENSMUST00000145532 Atpaf2-005 nonsense_mediated_decay Mus_musculus 2e-26 124
ENSMUST00000108721 Atpaf2-001 protein_coding Mus_musculus 2e-26 124
ENSMUST00000141987 Atpaf2-002 processed_transcript Mus_musculus 0.00000000000004 84
ENSMUST00000154387 Atpaf2-004 processed_transcript Mus_musculus 0.0000000000005 81
ENSMUST00000138696 Atpaf2-003 processed_transcript Mus_musculus 0.000000000002 79

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