C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase mitochondrial F1 complex assembly factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444058 ATPAF2-015 ENSG00000171953 9606 - 17:18021745-18039209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000444058
Transcript ID Adipose Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000444058 2.519±0.00 4.438±0.00 4.648±0.00 7.286±0.00 6.653±0.00 4.337±3.06 6.359±0.00 13.182±7.45 12.348±3.44 23.449±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0002 CGP 17:17843511-18016889
CIL_0000DY CIL_0000DY_0001 CGP 17:17972813-18039209
CIL_0000DZ CIL_0000DZ_0001 CGP 17:17977409-18068404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0043461 IEA proton-transporting ATP synthase complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108721 Atpaf2-001 protein_coding Mus_musculus 0 667
ENSMUST00000138696 Atpaf2-003 processed_transcript Mus_musculus 0 621
ENSMUST00000145532 Atpaf2-005 nonsense_mediated_decay Mus_musculus 0 569
ENSMUST00000154387 Atpaf2-004 processed_transcript Mus_musculus 0 425
ENSMUST00000156966 Atpaf2-006 retained_intron Mus_musculus 0 339
ENSMUST00000141987 Atpaf2-002 processed_transcript Mus_musculus 0 333

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