C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase mitochondrial F1 complex assembly factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474627 ATPAF2-001 ENSG00000171953 9606 - 17:18018010-18039168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaENST00000474627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta
ENST00000474627 1.115±0.00 3.061±0.00 0.937±0.00 2.646±0.76 1.580±0.09 1.210±0.28 2.579±1.63 1.340±0.98 2.010±0.00 3.366±1.82 4.649±1.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0002 CGP 17:17843511-18016889
CIL_0000DY CIL_0000DY_0001 CGP 17:17972813-18039209
CIL_0000DZ CIL_0000DZ_0001 CGP 17:17977409-18068404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0016607 IDA nuclear speck
GO:0043461 IEA:NAS proton-transporting ATP synthase complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108721 Atpaf2-001 protein_coding Mus_musculus 0 996
ENSMUST00000145532 Atpaf2-005 nonsense_mediated_decay Mus_musculus 0 811
ENSMUST00000138696 Atpaf2-003 processed_transcript Mus_musculus 0 763
ENSMUST00000154387 Atpaf2-004 processed_transcript Mus_musculus 0 425
ENSMUST00000156966 Atpaf2-006 retained_intron Mus_musculus 0 355
ENSMUST00000141987 Atpaf2-002 processed_transcript Mus_musculus 0 333

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