C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 4-aminobutyrate aminotransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138987 Abat-007 ENSMUSG00000057880 10090 + 16:8572902-8605633 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000138987
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000138987 112.264±0.00 17.677±0.00 3.561±0.44 6.968±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RL CIL_0007RL_0002 VISTA 16:7923606-8524476
CIL_0000ER CIL_0000ER_0002 CGP 16:8470788-8621568
CIL_0000EU CIL_0000EU_0002 CGP 16:8513429-8637712

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003867 IEA 4-aminobutyrate transaminase activity
GO:0005739 IDA mitochondrion
GO:0009448 IEA gamma-aminobutyric acid metabolic process
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268251 ABAT-001 protein_coding Homo_sapiens 0 523
ENST00000396600 ABAT-201 protein_coding Homo_sapiens 0 523
ENST00000425191 ABAT-005 protein_coding Homo_sapiens 0 523
ENST00000564453 ABAT-015 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000566590 ABAT-002 nonsense_mediated_decay Homo_sapiens 0 523
ENST00000567812 ABAT-003 protein_coding Homo_sapiens 0 523
ENST00000569156 ABAT-006 protein_coding Homo_sapiens 0 523

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