C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139330 Prpf40b-016 ENSMUSG00000023007 10090 + 15:99307885-99315093 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000139330
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000139330 52.585±0.00 60.834±0.00 12.007±2.98 71.809±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261897 PRPF40B-002 protein_coding Homo_sapiens 0 1044
ENST00000335154 FMNL3-002 protein_coding Homo_sapiens 0 344
ENST00000380281 PRPF40B-001 protein_coding Homo_sapiens 0 1170
ENST00000546626 PRPF40B-014 retained_intron Homo_sapiens 0 479
ENST00000548399 PRPF40B-012 retained_intron Homo_sapiens 0 403
ENST00000548825 PRPF40B-019 protein_coding Homo_sapiens 0 1170
ENST00000549547 PRPF40B-016 nonsense_mediated_decay Homo_sapiens 0 411

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