C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139715 Psmd1-002 ENSMUSG00000026229 10090 + 1:86064619-86132749 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000139715
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000139715 23.075±3.73 15.301±1.19 19.365±5.30 20.161±6.06 13.073±3.93 14.770±2.55 14.442±3.35 14.865±7.44 22.254±1.84 28.029±6.93 13.696±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076M CIL_00076M_0002 CGP 1:86045863-86139151
CIL_0004KX CIL_0004KX_0003 CGP 1:86064387-86139151

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IDA proteasome complex
GO:0005515 IPI protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308696 PSMD1-001 protein_coding Homo_sapiens 0 3035
ENST00000373635 PSMD1-201 protein_coding Homo_sapiens 0 2852
ENST00000409643 PSMD1-003 protein_coding Homo_sapiens 0 2852
ENST00000431051 PSMD1-002 nonsense_mediated_decay Homo_sapiens 0 3338
ENST00000440838 PSMD1-005 protein_coding Homo_sapiens 0 409
ENST00000444007 PSMD1-006 protein_coding Homo_sapiens 0 486
ENST00000447633 PSMD1-009 protein_coding Homo_sapiens 0 649
ENST00000467792 PSMD1-010 retained_intron Homo_sapiens 0 544
ENST00000488354 PSMD1-007 processed_transcript Homo_sapiens 2e-28 130
ENST00000619128 PSMD1-202 protein_coding Homo_sapiens 0 3035

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