C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139736 Runx1t1-005 ENSMUSG00000006586 10090 + 4:13889220-13889962 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryENSMUST00000139736
Transcript ID Adrenal Breast Colon Liver Lung Ovary
ENSMUST00000139736 0.888±0.31 4.591±1.46 2.517±0.90 0.140±0.00 3.677±0.39 5.967±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O2 CIL_0007O2_0004 UCNEbase 4:12306673-14026114
CIL_00015G CIL_00015G_0002 CGP 4:12906838-13893649
CIL_0009B0 CIL_0009B0_0002 VISTA 4:13486474-14089660
CIL_0007WO CIL_0007WO_0002 VISTA 4:13531422-14134010
CIL_00084U CIL_00084U_0002 VISTA 4:13531423-14134052
CIL_0008R4 CIL_0008R4_0002 VISTA 4:13724600-14326426

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265814 RUNX1T1-201 protein_coding Homo_sapiens 0 468
ENST00000360348 RUNX1T1-009 protein_coding Homo_sapiens 0 468
ENST00000396218 RUNX1T1-002 protein_coding Homo_sapiens 0 468
ENST00000422361 RUNX1T1-004 protein_coding Homo_sapiens 0 468
ENST00000436581 RUNX1T1-202 protein_coding Homo_sapiens 0 468
ENST00000518844 RUNX1T1-010 protein_coding Homo_sapiens 0 368
ENST00000520724 RUNX1T1-011 protein_coding Homo_sapiens 0 468
ENST00000521078 RUNX1T1-044 retained_intron Homo_sapiens 0 372
ENST00000523629 RUNX1T1-001 protein_coding Homo_sapiens 0 468
ENST00000613302 RUNX1T1-203 protein_coding Homo_sapiens 0 468
ENST00000613886 RUNX1T1-204 protein_coding Homo_sapiens 0 468
ENST00000614812 RUNX1T1-205 protein_coding Homo_sapiens 0 468
ENST00000615601 RUNX1T1-206 protein_coding Homo_sapiens 0 468
ENST00000617740 RUNX1T1-207 protein_coding Homo_sapiens 0 468

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