C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615601 RUNX1T1-206 ENSG00000079102 9606 - 8:91954967-92103226 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000615601
Transcript ID Adipose Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000615601 0.330±0.00 1.534±0.00 0.468±0.00 0.046±0.00 0.926±0.00 0.597±0.00 0.364±0.00 0.523±0.00 1.732±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R4 CIL_0008R4_0001 VISTA 8:91512531-92114390
CIL_00084U CIL_00084U_0001 VISTA 8:91718140-92321117
CIL_0007WO CIL_0007WO_0001 VISTA 8:91718683-92321023
CIL_0009B0 CIL_0009B0_0001 VISTA 8:91758469-92361167
CIL_0007O2 CIL_0007O2_0001 UCNEbase 8:91812903-93072504

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006761 Runx1t1-001 protein_coding Mus_musculus 0 3694
ENSMUST00000105566 Runx1t1-201 protein_coding Mus_musculus 0 3520
ENSMUST00000098256 Runx1t1-004 protein_coding Mus_musculus 0 3520
ENSMUST00000098257 Runx1t1-003 protein_coding Mus_musculus 0 3040
ENSDART00000147226 runx1t1-001 protein_coding Danio_rerio 0 1122
ENSDART00000010294 runx1t1-201 protein_coding Danio_rerio 0 1112
ENSMUST00000150583 Runx1t1-002 processed_transcript Mus_musculus 0 665
ENSDART00000123270 runx1t1-004 protein_coding Danio_rerio 0 614
ENSMUST00000139736 Runx1t1-005 processed_transcript Mus_musculus 0 468
ENSDART00000151192 runx1t1-003 protein_coding Danio_rerio 0 248

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