C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006586 Runx1t1 10090 + 4:13743436-13893649 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006761 Runx1t1-001 13743436-13893649 protein_coding
  ENSMUST00000098256 Runx1t1-004 13784782-13891117 protein_coding
  ENSMUST00000098257 Runx1t1-003 13771377-13890323 protein_coding
  ENSMUST00000105566 Runx1t1-201 13751297-13893628 protein_coding
  ENSMUST00000139736 Runx1t1-005 13889220-13889962 processed_transcript
  ENSMUST00000150583 Runx1t1-002 13751297-13843027 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006761ENSMUST00000098256ENSMUST00000098257ENSMUST00000105566ENSMUST00000139736ENSMUST00000150583
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006761 1.162±0.73 0.164±0.02 1.513±0.59 10.052±7.27 0.271±0.05 0.450±0.12 0.210±0.07 0.098±0.04 0.899±0.83 0.793±0.30 0.207±0.05 0.495±0.20 0.477±0.36 N/A
ENSMUST00000098256 1.438±0.19 0.179±0.07 N/A 2.984±0.00 0.826±0.42 0.220±0.06 0.409±0.11 0.290±0.06 1.118±0.69 0.649±0.24 N/A 1.362±0.44 0.257±0.04 0.368±0.00
ENSMUST00000098257 0.762±0.47 0.136±0.07 N/A 7.020±0.00 0.656±0.04 0.498±0.21 0.280±0.04 0.223±0.05 0.064±0.02 0.680±0.10 N/A 1.055±0.82 0.348±0.11 2.710±0.63
ENSMUST00000105566 N/A N/A N/A N/A N/A 0.292±0.00 N/A N/A 0.455±0.14 N/A N/A N/A N/A 0.470±0.26
ENSMUST00000139736 N/A 0.888±0.31 N/A N/A 4.591±1.46 2.517±0.90 N/A N/A 0.140±0.00 3.677±0.39 N/A 5.967±1.78 N/A N/A
ENSMUST00000150583 N/A N/A N/A N/A N/A 0.330±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O2 CIL_0007O2_0004 UCNEbase 4:12306673-14026114
CIL_00015G CIL_00015G_0002 CGP 4:12906838-13893649
CIL_0009B0 CIL_0009B0_0002 VISTA 4:13486474-14089660
CIL_0007WO CIL_0007WO_0002 VISTA 4:13531422-14134010
CIL_00084U CIL_00084U_0002 VISTA 4:13531423-14134052
CIL_0008R4 CIL_0008R4_0002 VISTA 4:13724600-14326426

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0010977 ISS negative regulation of neuron projection development
GO:0017053 ISS transcriptional repressor complex
GO:0042803 IPI protein homodimerization activity
GO:0045444 IDA fat cell differentiation
GO:0046872 IEA metal ion binding
GO:0051101 IDA regulation of DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003680 runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) protein_coding Danio_rerio
ENSG00000079102 RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) protein_coding Homo_sapiens

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