C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Wolf-Hirschhorn syndrome candidate 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514329 WHSC1-024 ENSG00000109685 9606 + 4:1939661-1956188 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006V8 CIL_0006V8_0001 CGP 4:1811479-1982207
CIL_0006V9 CIL_0006V9_0001 CGP 4:1871424-2041903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066854 Whsc1-201 protein_coding Mus_musculus 0 660
ENSMUST00000141416 Whsc1-003 nonsense_mediated_decay Mus_musculus 0 660
ENSMUST00000058096 Whsc1-002 protein_coding Mus_musculus 0 660
ENSMUST00000137191 Whsc1-007 nonsense_mediated_decay Mus_musculus 0 660
ENSMUST00000139845 Whsc1-006 nonsense_mediated_decay Mus_musculus 0 660
ENSMUST00000075812 Whsc1-001 protein_coding Mus_musculus 0 660
ENSMUST00000114397 Whsc1-004 protein_coding Mus_musculus 9e-38 161
ENSMUST00000142080 Whsc1-005 protein_coding Mus_musculus 1e-36 158
ENSMUST00000114399 Whsc1-009 protein_coding Mus_musculus 1e-36 158

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