C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wolf-Hirschhorn syndrome candidate 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000353275 WHSC1-002 ENSG00000109685 9606 + 4:1892782-1982203 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000353275
Transcript ID Kidney
ENST00000353275 0.538±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006V8 CIL_0006V8_0001 CGP 4:1811479-1982207
CIL_0006V9 CIL_0006V9_0001 CGP 4:1871424-2041903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0009653 TAS anatomical structure morphogenesis
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0031965 IDA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137191 Whsc1-007 nonsense_mediated_decay Mus_musculus 0 4822
ENSMUST00000066854 Whsc1-201 protein_coding Mus_musculus 0 2625
ENSMUST00000141416 Whsc1-003 nonsense_mediated_decay Mus_musculus 0 2625
ENSMUST00000058096 Whsc1-002 protein_coding Mus_musculus 0 2625
ENSMUST00000139845 Whsc1-006 nonsense_mediated_decay Mus_musculus 0 2625
ENSMUST00000075812 Whsc1-001 protein_coding Mus_musculus 0 2625
ENSMUST00000114399 Whsc1-009 protein_coding Mus_musculus 0 2204
ENSMUST00000114397 Whsc1-004 protein_coding Mus_musculus 0 2085
ENSMUST00000155880 Whsc1-008 protein_coding Mus_musculus 0 791
ENSMUST00000142080 Whsc1-005 protein_coding Mus_musculus 0 571
ENSMUST00000133870 Whsc1-010 retained_intron Mus_musculus 0 353

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