C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntrophin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140295 Sntg1-001 ENSMUSG00000025909 10090 - 1:8361475-9299238 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainLiverOvaryPlacentaENSMUST00000140295
Transcript ID Adipose Adrenal Bladder Brain Liver Ovary Placenta
ENSMUST00000140295 0.058±0.00 0.153±0.00 0.022±0.00 0.536±0.01 0.008±0.00 0.033±0.01 0.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053R CIL_00053R_0002 CGP 1:7088920-9299878

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008022 IEA protein C-terminus binding
GO:0032587 IEA ruffle membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276467 SNTG1-201 protein_coding Homo_sapiens 0 1511
ENST00000517473 SNTG1-003 protein_coding Homo_sapiens 0 1511
ENST00000518864 SNTG1-002 protein_coding Homo_sapiens 0 1840
ENST00000520825 SNTG1-004 nonsense_mediated_decay Homo_sapiens 0 1716
ENST00000522124 SNTG1-001 protein_coding Homo_sapiens 0 1842
ENST00000523085 SNTG1-008 protein_coding Homo_sapiens 0 346
ENST00000524004 SNTG1-009 nonsense_mediated_decay Homo_sapiens 0 647
ENST00000620202 SNTG1-202 protein_coding Homo_sapiens 0 1844

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