C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntrophin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518864 SNTG1-002 ENSG00000147481 9606 + 8:49909789-50792829 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0007154 TAS cell communication
GO:0008022 IPI protein C-terminus binding
GO:0016013 TAS syntrophin complex
GO:0032587 IDA ruffle membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140295 Sntg1-001 protein_coding Mus_musculus 0 1840
ENSMUST00000132064 Sntg1-004 protein_coding Mus_musculus 0 1827
ENSMUST00000115488 Sntg1-201 protein_coding Mus_musculus 0 1818
ENSMUST00000140302 Sntg1-005 nonsense_mediated_decay Mus_musculus 0 1011
ENSMUST00000115484 Sntg1-006 protein_coding Mus_musculus 0 798
ENSMUST00000135046 Sntg1-007 protein_coding Mus_musculus 0 339
ENSMUST00000144593 Sntg1-003 nonsense_mediated_decay Mus_musculus 0 311
ENSMUST00000134075 Sntg1-002 retained_intron Mus_musculus 0 193

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