C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: expressed sequence AU022252
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141112 AU022252-002 ENSMUSG00000078584 10090 - 4:119219842-119232712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000141112
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000141112 3.053±0.66 3.547±0.81 2.121±0.50 4.503±1.05 2.162±0.77 2.848±0.39 2.144±0.50 3.218±0.40 6.078±4.33 2.754±0.07 3.968±1.20 2.842±0.80 1.670±0.11 3.418±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N2 CIL_0008N2_0002 VISTA 4:118719151-119320076
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372525 C1orf50-001 protein_coding Homo_sapiens 0 678
ENST00000464081 C1orf50-004 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000468913 C1orf50-007 processed_transcript Homo_sapiens 0 475
ENST00000494155 C1orf50-003 retained_intron Homo_sapiens 1e-38 163
ENST00000603943 C1orf50-008 nonsense_mediated_decay Homo_sapiens 0 597

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