C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vimentin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141365 Vim-003 ENSMUSG00000026728 10090 + 2:13573927-13574738 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AO CIL_0005AO_0002 CGP 2:13573927-13793808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005198 IMP structural molecule activity
GO:0005212 IDA structural constituent of eye lens
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005856 ISO cytoskeleton
GO:0005882 IDA intermediate filament
GO:0005886 IDA plasma membrane
GO:0010977 IGI negative regulation of neuron projection development
GO:0014002 IGI astrocyte development
GO:0031252 IDA cell leading edge
GO:0042995 IDA cell projection
GO:0043005 IDA neuron projection
GO:0045098 TAS type III intermediate filament
GO:0045103 IMP intermediate filament-based process
GO:0045109 IGI intermediate filament organization
GO:0060020 IMP Bergmann glial cell differentiation
GO:0060395 IDA SMAD protein signal transduction
GO:0070307 IDA lens fiber cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0 527
ENST00000478317 VIM-004 processed_transcript Homo_sapiens 0 527
ENST00000478746 VIM-005 processed_transcript Homo_sapiens 0 527
ENST00000485947 VIM-007 processed_transcript Homo_sapiens 0 527
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000497849 VIM-006 processed_transcript Homo_sapiens 0 418
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0 527

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