C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0005AO_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000026025-ENSG00000148488 | CGP | 9606 | 10:17228259-17454330  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000026025  (VIM)vimentin |
ENST00000224237 (VIM-001)
|
17229278-17237593 | protein_coding | |
|
ENST00000421459 (VIM-008)
|
17230609-17235085 | protein_coding | ||
|
ENST00000469543 (VIM-003)
|
17230004-17237593 | nonsense_mediated_decay | ||
|
ENST00000478317 (VIM-004)
|
17228259-17229950 | processed_transcript | ||
|
ENST00000478746 (VIM-005)
|
17228515-17229870 | processed_transcript | ||
|
ENST00000485947 (VIM-007)
|
17229291-17231093 | processed_transcript | ||
|
ENST00000487938 (VIM-002)
|
17229278-17237593 | nonsense_mediated_decay | ||
|
ENST00000495528 (VIM-009)
|
17233225-17235034 | processed_transcript | ||
|
ENST00000497849 (VIM-006)
|
17228869-17229750 | processed_transcript | ||
|
ENST00000544301 (VIM-201)
|
17228259-17237585 | protein_coding | ||
|
ENSG00000148488 (ST8SIA6) ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 |
ENST00000377602 (ST8SIA6-001)
|
17319874-17454330 | protein_coding | |
|
ENST00000440449 (ST8SIA6-002)
|
17318383-17327109 | protein_coding | ||
|
ENSG00000204832 (ST8SIA6-AS1) ST8SIA6 antisense RNA 1 |
ENST00000377597 (ST8SIA6-AS1-003)
|
17386951-17410631 | antisense | |
|
ENST00000451190 (ST8SIA6-AS1-004)
|
17408027-17413503 | antisense | ||
|
ENST00000451225 (ST8SIA6-AS1-002)
|
17386994-17408286 | antisense | ||
|
ENST00000457649 (ST8SIA6-AS1-001)
|
17386936-17408286 | antisense | ||
|
ENSG00000234961 (RP11-124N14.3) |
ENST00000456355 (RP11-124N14.3-001)
|
17233325-17234833 | antisense | |
| CIL_0005AO_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000026728-ENSMUSG00000003418 | CGP | 10090 | 2:13573927-13793808 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000003418 (St8sia6) ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 |
ENSMUST00000003509 (St8sia6-001)
|
13651020-13793808 | protein_coding | |
|
ENSMUST00000150781 (St8sia6-002)
|
13657154-13793293 | processed_transcript | ||
|
ENSMUSG00000026728 (Vim) vimentin |
ENSMUST00000028062 (Vim-001)
|
13573952-13582826 | protein_coding | |
|
ENSMUST00000141365 (Vim-003)
|
13573927-13574738 | protein_coding | ||
|
ENSMUST00000148248 (Vim-004)
|
13579384-13582478 | retained_intron | ||
|
ENSMUST00000155605 (Vim-002)
|
13574322-13578604 | retained_intron | ||
Expression Patterns
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