C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vimentin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544301 VIM-201 ENSG00000026025 9606 + 10:17228259-17237585 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046B CIL_00046B_0002 CGP 10:17142254-17237593
CIL_0005AO CIL_0005AO_0001 CGP 10:17228259-17454330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IPI glycoprotein binding
GO:0003725 IDA double-stranded RNA binding
GO:0005198 IEA structural molecule activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005212 IEA structural constituent of eye lens
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005777 IDA peroxisome
GO:0005829 IDA cytosol
GO:0005856 TAS cytoskeleton
GO:0005882 IDA:IEA intermediate filament
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0006928 TAS cellular component movement
GO:0008022 IPI protein C-terminus binding
GO:0010628 IEA positive regulation of gene expression
GO:0010977 IEA negative regulation of neuron projection development
GO:0014002 IEA astrocyte development
GO:0016032 IEA viral process
GO:0030049 TAS muscle filament sliding
GO:0031252 IEA cell leading edge
GO:0042802 IPI identical protein binding
GO:0042995 IEA cell projection
GO:0043005 IEA neuron projection
GO:0045103 IEA intermediate filament-based process
GO:0045109 IEA intermediate filament organization
GO:0045111 IDA intermediate filament cytoskeleton
GO:0060020 IEA Bergmann glial cell differentiation
GO:0060395 IEA SMAD protein signal transduction
GO:0070062 IDA extracellular vesicular exosome
GO:0070307 IEA lens fiber cell development
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 0 2274
ENSMUST00000155605 Vim-002 retained_intron Mus_musculus 0 990
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 0 697
ENSMUST00000141365 Vim-003 protein_coding Mus_musculus 0 527
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 0.00000000000005 84
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0.000000000002 79
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0.000000000002 79
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0.000000001 69
ENSMUST00000023712 Krt2-001 protein_coding Mus_musculus 0.000000005 68
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0.000000005 68
ENSMUST00000088049 Krt86-201 protein_coding Mus_musculus 0.00000006 64
ENSMUST00000081945 Krt83-201 protein_coding Mus_musculus 0.00000006 64
ENSMUST00000061185 Krt81-201 protein_coding Mus_musculus 0.00000006 64
ENSMUST00000023718 5430421N21Rik-001 protein_coding Mus_musculus 0.00000006 64

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