C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vimentin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026728 Vim 10090 + 2:13573927-13582826 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028062 Vim-001 13573952-13582826 protein_coding
  ENSMUST00000141365 Vim-003 13573927-13574738 protein_coding
  ENSMUST00000148248 Vim-004 13579384-13582478 retained_intron
  ENSMUST00000155605 Vim-002 13574322-13578604 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028062ENSMUST00000148248ENSMUST00000155605
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028062 280.031±152.77 N/A 244.013±9.78 94.990±59.60 103.454±17.45 47.343±8.92 23.355±13.14 15.401±2.99 21.483±17.70 104.351±30.24 27.445±5.06 131.420±44.10 78.665±14.92 10.748±1.86
ENSMUST00000148248 N/A N/A N/A N/A 290.438±0.00 N/A N/A N/A N/A N/A N/A 131.645±1.84 N/A N/A
ENSMUST00000155605 949.418±326.44 241.101±35.63 187.170±60.61 177.143±132.02 1030.857±198.57 299.508±58.32 149.379±44.93 66.632±3.31 27.025±18.98 719.518±146.48 N/A 636.753±142.93 97.441±61.85 31.219±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AO CIL_0005AO_0002 CGP 2:13573927-13793808

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0003725 ISO double-stranded RNA binding
GO:0005198 IMP structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005212 IDA structural constituent of eye lens
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005777 IEA peroxisome
GO:0005829 IEA cytosol
GO:0005856 ISO cytoskeleton
GO:0005882 IDA intermediate filament
GO:0005886 IDA plasma membrane
GO:0005925 IEA focal adhesion
GO:0008022 IEA protein C-terminus binding
GO:0010628 IMP positive regulation of gene expression
GO:0010977 IGI negative regulation of neuron projection development
GO:0014002 IGI astrocyte development
GO:0031252 IDA cell leading edge
GO:0042802 IEA identical protein binding
GO:0042995 IDA cell projection
GO:0043005 IDA neuron projection
GO:0045098 TAS type III intermediate filament
GO:0045103 IMP intermediate filament-based process
GO:0045109 IGI intermediate filament organization
GO:0045111 IEA intermediate filament cytoskeleton
GO:0060020 IMP Bergmann glial cell differentiation
GO:0060395 IDA SMAD protein signal transduction
GO:0070062 IEA extracellular vesicular exosome
GO:0070307 IDA lens fiber cell development
GO:0097110 IEA scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010008 vim vimentin protein_coding Danio_rerio
ENSDARG00000044501 viml vimentin like protein_coding Danio_rerio
ENSG00000026025 VIM vimentin protein_coding Homo_sapiens

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