C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141629 Rbm3-006 ENSMUSG00000031167 10090 - X:8143028-8145697 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungOvaryENSMUST00000141629
Transcript ID Colon Heart Kidney Liver Lung Ovary
ENSMUST00000141629 5.758±0.00 4.143±0.31 5.380±1.30 3.651±1.75 9.258±0.00 11.794±0.87

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0006412 IDA translation
GO:0009409 IDA response to cold
GO:0035196 IDA production of miRNAs involved in gene silencing by miRNA
GO:0043023 IPI ribosomal large subunit binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354480 RBM3-004 protein_coding Homo_sapiens 0 318
ENST00000376755 RBM3-005 protein_coding Homo_sapiens 0 292
ENST00000376759 RBM3-003 protein_coding Homo_sapiens 0 292
ENST00000466764 RBM3-009 processed_transcript Homo_sapiens 0 939
ENST00000485213 RBM3-007 processed_transcript Homo_sapiens 0 364
ENST00000488216 RBM3-008 processed_transcript Homo_sapiens 0 449
ENST00000489344 RBM3-001 processed_transcript Homo_sapiens 0 291
ENST00000490127 RBM3-011 processed_transcript Homo_sapiens 0 298
ENST00000491236 RBM3-010 processed_transcript Homo_sapiens 0 261
ENST00000491240 RBM3-006 processed_transcript Homo_sapiens 0 337

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