C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAS-related C3 botulinum substrate 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142229 Rac3-002 ENSMUSG00000018012 10090 + 11:120721573-120723606 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000142229
Transcript ID Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000142229 3.756±0.00 129.156±79.62 2.099±0.00 0.266±0.00 0.724±0.42 0.472±0.20 8.982±2.38 3.137±0.99 0.664±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VQ CIL_0004VQ_0002 CGP 11:120713925-120723969
CIL_00043Y CIL_00043Y_0003 CGP 11:120721470-120727281

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0007264 IEA small GTPase mediated signal transduction
GO:0030426 ISO growth cone
GO:0031175 IDA neuron projection development
GO:0031941 ISO filamentous actin
GO:0043005 ISO neuron projection
GO:0043025 ISO neuronal cell body
GO:0050885 IMP neuromuscular process controlling balance
GO:0050905 IMP neuromuscular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306897 RAC3-001 protein_coding Homo_sapiens 0 676
ENST00000580965 RAC3-002 protein_coding Homo_sapiens 0 641
ENST00000584341 RAC3-003 protein_coding Homo_sapiens 0 532
ENST00000585014 RAC3-004 retained_intron Homo_sapiens 0 444

Loading