C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142449 Sema6c-002 ENSMUSG00000038777 10090 + 3:95160505-95174024 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000142449
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000142449 1.218±0.60 1.230±0.16 4.338±0.00 2.275±0.99 0.328±0.09 0.617±0.00 0.555±0.14 0.147±0.05 0.576±0.15 2.499±0.84 0.279±0.00 1.392±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000581 CIL_000581_0003 CGP 3:95139521-95174024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341697 SEMA6C-004 protein_coding Homo_sapiens 0 1749
ENST00000368912 SEMA6C-003 protein_coding Homo_sapiens 0 2239
ENST00000368913 SEMA6C-002 protein_coding Homo_sapiens 0 2649
ENST00000368914 SEMA6C-001 protein_coding Homo_sapiens 0 1749
ENST00000464018 SEMA6C-006 processed_transcript Homo_sapiens 0 374
ENST00000479820 SEMA6C-005 processed_transcript Homo_sapiens 0 195
ENST00000485745 SEMA6C-008 processed_transcript Homo_sapiens 1e-27 126
ENST00000613223 SEMA6C-201 protein_coding Homo_sapiens 0 1003
ENST00000621728 SEMA6C-202 protein_coding Homo_sapiens 0 1020

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