C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 5 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142663 Hps5-005 ENSMUSG00000014418 10090 - 7:46760466-46795678 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungOvaryPlacentaENSMUST00000142663
Transcript ID Brain Liver Lung Ovary Placenta
ENSMUST00000142663 4.111±1.40 0.481±0.03 1.606±0.00 1.914±0.00 2.316±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041D CIL_00041D_0003 CGP 7:46760466-46823800

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006996 IMP organelle organization
GO:0007596 IMP blood coagulation
GO:0043473 IMP pigmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000349215 HPS5-001 protein_coding Homo_sapiens 0 1729
ENST00000352460 HPS5-006 processed_transcript Homo_sapiens 0 523
ENST00000396253 HPS5-002 protein_coding Homo_sapiens 0 1568
ENST00000399287 HPS5-004 retained_intron Homo_sapiens 0 298
ENST00000438420 HPS5-005 protein_coding Homo_sapiens 0 1568
ENST00000531848 HPS5-003 protein_coding Homo_sapiens 0 1568
ENST00000537258 HPS5-007 protein_coding Homo_sapiens 0 802
ENST00000543728 HPS5-010 processed_transcript Homo_sapiens 4.99997e-41 171
ENST00000544218 HPS5-009 protein_coding Homo_sapiens 0 198
ENST00000589545 HPS5-012 processed_transcript Homo_sapiens 1e-39 167

Loading