C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142917 Ptprg-002 ENSMUSG00000021745 10090 + 14:11553553-12238564 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000142917
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000142917 6.214±1.08 8.930±1.55 3.190±1.62 3.846±0.83 3.533±1.22 3.387±0.70 4.570±1.24 1.134±0.74 8.845±1.69 16.852±7.39 0.844±0.27 1.033±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QX CIL_0008QX_0002 VISTA 14:11475621-12079078
CIL_00034G CIL_00034G_0002 CGP 14:11553532-12303231

Gene Ontology

GO IDEvidence TypeGO Description
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092552 ptprga-201 protein_coding Danio_rerio 0 1434
ENSDART00000017309 ca16b-001 protein_coding Danio_rerio 0 869
ENSDART00000154392 ca16b-003 protein_coding Danio_rerio 0 257
ENST00000295874 PTPRG-002 protein_coding Homo_sapiens 0 2700
ENST00000468576 PTPRG-008 retained_intron Homo_sapiens 0 431
ENST00000474889 PTPRG-001 protein_coding Homo_sapiens 0 4937
ENST00000475012 PTPRG-005 processed_transcript Homo_sapiens 0 3018
ENST00000475527 PTPRG-003 processed_transcript Homo_sapiens 0 656
ENST00000485215 PTPRG-007 processed_transcript Homo_sapiens 0 728
ENST00000495879 PTPRG-006 processed_transcript Homo_sapiens 0 994
ENST00000615556 PTPRG-201 protein_coding Homo_sapiens 0 4937
ENST00000618938 PTPRG-202 protein_coding Homo_sapiens 0 3310

Loading