C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 16-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144047 Atg16l1-008 ENSMUSG00000026289 10090 + 1:87755870-87771398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000144047
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000144047 25.071±0.00 19.749±0.00 25.975±0.15 3.695±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HZ CIL_0003HZ_0002 CGP 1:87620312-87792428
CIL_0004L2 CIL_0004L2_0003 CGP 1:87755870-87845158

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 TAS autophagic vacuole assembly
GO:0000421 IDA autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005776 IDA autophagic vacuole
GO:0039689 IMP negative stranded viral RNA replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347464 ATG16L1-201 protein_coding Homo_sapiens 9e-23 113
ENST00000373525 ATG16L1-004 protein_coding Homo_sapiens 8e-23 113
ENST00000392017 ATG16L1-001 protein_coding Homo_sapiens 0 579
ENST00000392018 ATG16L1-005 protein_coding Homo_sapiens 0 579
ENST00000392020 ATG16L1-003 protein_coding Homo_sapiens 0 579
ENST00000392021 ATG16L1-002 nonsense_mediated_decay Homo_sapiens 0 579
ENST00000417017 ATG16L1-013 protein_coding Homo_sapiens 0 316
ENST00000419681 ATG16L1-006 protein_coding Homo_sapiens 2e-23 113
ENST00000431917 ATG16L1-012 protein_coding Homo_sapiens 0 331
ENST00000444735 ATG16L1-007 protein_coding Homo_sapiens 2e-23 113
ENST00000474148 ATG16L1-008 retained_intron Homo_sapiens 0 579
ENST00000479942 ATG16L1-009 retained_intron Homo_sapiens 0 579
ENST00000485623 ATG16L1-014 retained_intron Homo_sapiens 0 315

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