C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet derived growth factor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144934 Pdgfa-007 ENSMUSG00000025856 10090 - 5:138977145-138994281 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000144934
Transcript ID Placenta
ENSMUST00000144934 30.724±21.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018I CIL_00018I_0002 CGP 5:138976014-139150001

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354513 PDGFA-002 protein_coding Homo_sapiens 0 579
ENST00000400761 PDGFA-005 protein_coding Homo_sapiens 0 732
ENST00000402802 PDGFA-001 protein_coding Homo_sapiens 0 669
ENST00000405692 PDGFA-006 protein_coding Homo_sapiens 0 239
ENST00000426681 PDGFA-004 processed_transcript Homo_sapiens 6e-36 154
ENST00000482462 PDGFA-003 retained_intron Homo_sapiens 0 438

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