C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145037 Bloc1s6-005 ENSMUSG00000005804 10090 + 2:122738530-122746046 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungOvaryPlacentaTestisENSMUST00000145037
Transcript ID Adipose Adrenal Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000145037 13.944±0.36 18.425±4.07 12.453±3.19 16.512±4.10 5.030±0.00 9.543±0.62 13.439±1.85 43.793±1.76 9.953±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QN CIL_0004QN_0003 CGP 2:122681233-122749475
CIL_0004NC CIL_0004NC_0002 CGP 2:122738503-122809569

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220531 BLOC1S6-001 protein_coding Homo_sapiens 0 263
ENST00000358001 RP3-499B10.3-001 processed_pseudogene Homo_sapiens 2e-28 130
ENST00000562384 BLOC1S6-007 protein_coding Homo_sapiens 4e-24 115
ENST00000564310 BLOC1S6-020 nonsense_mediated_decay Homo_sapiens 1.99965e-42 176
ENST00000564765 BLOC1S6-019 protein_coding Homo_sapiens 0 200
ENST00000565216 BLOC1S6-012 protein_coding Homo_sapiens 1e-24 117
ENST00000565323 BLOC1S6-015 protein_coding Homo_sapiens 0 202
ENST00000565409 BLOC1S6-018 protein_coding Homo_sapiens 0 202
ENST00000566801 BLOC1S6-014 protein_coding Homo_sapiens 3e-24 115
ENST00000567461 BLOC1S6-006 protein_coding Homo_sapiens 8e-24 115
ENST00000567523 BLOC1S6-003 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000568816 BLOC1S6-004 protein_coding Homo_sapiens 3e-23 115
ENST00000568963 BLOC1S6-008 nonsense_mediated_decay Homo_sapiens 2e-22 110
ENST00000569076 BLOC1S6-009 protein_coding Homo_sapiens 1e-24 117

Loading