C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methionine-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145275 Mars-002 ENSMUSG00000040354 10090 - 10:127296226-127311678 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000145275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000145275 6.864±1.90 9.135±1.88 5.188±1.12 9.773±4.05 4.003±0.51 2.660±0.00 2.743±0.63 6.372±1.88 2.864±0.46 2.969±0.20 7.104±2.81 5.134±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A8 CIL_0003A8_0002 CGP 10:127281956-127296288
CIL_0003A7 CIL_0003A7_0002 CGP 10:127290774-127311786
CIL_00039K CIL_00039K_0002 CGP 10:127296221-127329943

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262027 MARS-003 protein_coding Homo_sapiens 0 2852
ENST00000447721 MARS-005 processed_transcript Homo_sapiens 0 1264
ENST00000537638 MARS-002 nonsense_mediated_decay Homo_sapiens 0 1858
ENST00000545888 MARS-004 nonsense_mediated_decay Homo_sapiens 0 2593
ENST00000546481 MARS-007 retained_intron Homo_sapiens 0 226
ENST00000546971 MARS-024 retained_intron Homo_sapiens 0 761
ENST00000547062 MARS-010 retained_intron Homo_sapiens 0 220
ENST00000547501 MARS-013 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000547665 MARS-033 protein_coding Homo_sapiens 0 215
ENST00000548146 MARS-016 processed_transcript Homo_sapiens 7e-37 158
ENST00000548202 MARS-027 retained_intron Homo_sapiens 0 667
ENST00000548630 MARS-025 retained_intron Homo_sapiens 0 261
ENST00000548674 MARS-008 processed_transcript Homo_sapiens 0 388
ENST00000548714 MARS-011 retained_intron Homo_sapiens 0 322
ENST00000548944 MARS-034 protein_coding Homo_sapiens 1e-31 139
ENST00000549048 MARS-026 retained_intron Homo_sapiens 0 553
ENST00000549074 MARS-015 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000549603 MARS-022 retained_intron Homo_sapiens 2e-36 156
ENST00000550449 MARS-009 retained_intron Homo_sapiens 0 401
ENST00000551172 MARS-031 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000551431 MARS-014 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000551805 MARS-028 retained_intron Homo_sapiens 0 366
ENST00000551842 MARS-012 retained_intron Homo_sapiens 0 479
ENST00000552007 MARS-019 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000552371 MARS-021 protein_coding Homo_sapiens 0 377
ENST00000552499 MARS-029 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000552914 MARS-030 protein_coding Homo_sapiens 0 292
ENST00000553123 MARS-017 retained_intron Homo_sapiens 0 490
ENST00000553162 MARS-020 retained_intron Homo_sapiens 0 568

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