C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003A8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000086980-ENSDARG00000059836 CGP 7955 6:58770954-58821727
GeneTranscriptPositionBiotype
ENSDARG00000059836 (ddit3)
DNA-damage-inducible transcript 3 		ENSDART00000083628 (ddit3-001) 58818530-58821727 protein_coding
ENSDARG00000086980 (mbd6)
methyl-CpG binding domain protein 6 		ENSDART00000122003 (mbd6-201) 58770954-58804193 protein_coding
ENSDART00000156662 (mbd6-001) 58774241-58813043 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003A8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025409-ENSMUSG00000025408 CGP 10090 10:127281956-127296288
GeneTranscriptPositionBiotype
ENSMUSG00000025408 (Ddit3)
DNA-damage inducible transcript 3 		ENSMUST00000026475 (Ddit3-001) 127290774-127296288 protein_coding
ENSMUST00000134686 (Ddit3-003) 127290794-127294582 retained_intron
ENSMUST00000139091 (Ddit3-002) 127290793-127296065 protein_coding
ENSMUSG00000025409 (Mbd6)
methyl-CpG binding domain protein 6 		ENSMUST00000026476 (Mbd6-001) 127281956-127288890 protein_coding
ENSMUST00000119078 (Mbd6-002) 127281956-127289018 protein_coding
ENSMUST00000126243 (Mbd6-007) 127281956-127285900 nonsense_mediated_decay
ENSMUST00000136169 (Mbd6-005) 127281956-127283668 nonsense_mediated_decay
ENSMUST00000154851 (Mbd6-004) 127282676-127284358 protein_coding
ENSMUST00000156208 (Mbd6-003) 127286568-127288853 protein_coding
ENSMUST00000172567 (Mbd6-008) 127283526-127284371 protein_coding
ENSMUSG00000025410 (Dctn2)
dynactin 2 		ENSMUST00000026479 (Dctn2-201) 127266262-127281959 protein_coding
ENSMUSG00000040354 (Mars)
methionine-tRNA synthetase 		ENSMUST00000037290 (Mars-001) 127296221-127311786 protein_coding
ENSMUST00000128369 (Mars-003) 127308036-127308973 retained_intron
ENSMUST00000134778 (Mars-004) 127296226-127297764 protein_coding
ENSMUST00000139683 (Mars-005) 127296349-127297675 retained_intron
ENSMUST00000145275 (Mars-002) 127296226-127311678 retained_intron
ENSMUST00000171564 (Mars-201) 127296222-127311786 protein_coding
ENSMUSG00000092593 (Gm20492)
predicted gene 20492 		ENSMUST00000172591 (Gm20492-001) 127288514-127289681 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003A8_0001ENSDARG00000059836ENSDART00000083628ENSDARG00000086980ENSDART00000122003ENSDART00000156662CIL_0003A8_0002ENSMUSG00000025408ENSMUST00000026475ENSMUST00000134686ENSMUST00000139091ENSMUSG00000025409ENSMUST00000026476ENSMUST00000119078ENSMUST00000126243ENSMUST00000136169ENSMUST00000154851ENSMUST00000156208ENSMUST00000172567ENSMUSG00000025410ENSMUST00000026479ENSMUSG00000040354ENSMUST00000037290ENSMUST00000128369ENSMUST00000134778ENSMUST00000139683ENSMUST00000145275ENSMUST00000171564ENSMUSG00000092593ENSMUST00000172591
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003A8_0001ENSDARG00000059836ENSDART00000083628ENSDARG00000086980ENSDART00000122003ENSDART00000156662CIL_0003A8_0002ENSMUSG00000025408ENSMUST00000026475ENSMUST00000139091ENSMUSG00000025409ENSMUST00000026476ENSMUST00000119078ENSMUST00000126243ENSMUSG00000025410ENSMUST00000026479ENSMUSG00000040354ENSMUST00000037290ENSMUST00000134778ENSMUST00000145275ENSMUST00000171564ENSMUSG00000092593ENSMUST00000172591
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000059836 ENSDART00000083628 N/A N/A N/A 6.734±0.27 N/A N/A 16.548±3.87 N/A 3.436±0.00 N/A 13.293±0.00 N/A N/A N/A
ENSDARG00000086980 ENSDART00000122003 N/A N/A N/A 5.151±2.04 N/A N/A 1.121±1.27 0.210±0.06 0.114±0.00 N/A 0.566±0.00 N/A N/A N/A
ENSDART00000156662 N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A 0.275±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025408 ENSMUST00000026475 18.013±0.51 35.112±4.10 27.062±1.84 34.667±0.00 19.043±2.50 17.640±2.02 11.079±0.29 15.682±0.91 26.246±9.29 14.748±1.82 16.685±2.66 40.729±9.17 38.401±13.31 56.003±10.26
ENSMUST00000134686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 71.242±0.00
ENSMUSG00000025409 ENSMUST00000026476 5.207±0.15 7.253±1.20 5.668±0.00 N/A 5.245±1.06 6.474±1.35 3.075±0.75 4.898±0.23 3.063±0.49 6.499±0.68 N/A 6.991±1.35 14.335±1.42 15.893±1.15
ENSMUST00000119078 4.301±0.27 11.636±2.15 15.486±0.00 9.068±1.77 6.932±2.36 7.328±2.30 2.387±0.00 4.055±0.00 4.105±1.42 6.486±1.32 N/A 7.201±1.38 11.573±5.10 8.882±0.00
ENSMUST00000126243 N/A N/A N/A N/A 3.386±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025410 ENSMUST00000026479 98.896±20.69 106.501±13.25 97.596±3.42 192.530±30.74 72.231±11.98 79.386±6.89 51.742±4.29 74.062±3.84 57.040±13.13 64.966±1.96 48.210±4.65 108.935±10.12 96.992±33.18 202.374±30.27
ENSMUSG00000040354 ENSMUST00000037290 22.359±4.51 30.118±2.81 17.043±5.31 9.367±3.19 20.817±3.30 16.869±1.76 7.712±0.58 16.151±1.22 28.873±11.29 15.270±0.66 2.650±0.00 29.724±8.20 20.023±8.90 12.475±3.43
ENSMUST00000128369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134778 N/A N/A N/A 31.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 53.988±21.21 N/A
ENSMUST00000139683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145275 6.864±1.90 9.135±1.88 5.188±1.12 9.773±4.05 4.003±0.51 2.660±0.00 2.743±0.63 N/A 6.372±1.88 2.864±0.46 2.969±0.20 7.104±2.81 5.134±0.00 N/A
ENSMUST00000171564 N/A 23.140±7.14 N/A 4.860±0.09 6.304±1.00 N/A 4.903±1.13 N/A 8.099±0.00 N/A 17.160±1.80 N/A N/A N/A
ENSMUSG00000092593 ENSMUST00000172591 2.788±0.36 0.502±0.02 2.997±0.43 2.516±2.13 2.174±0.60 0.703±0.20 0.391±0.14 1.654±0.43 0.824±0.38 0.715±0.27 0.474±0.19 5.419±3.27 1.338±0.81 4.940±1.37

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