C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: methionine-tRNA synthetase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040354 Mars 10090 - 10:127296221-127311786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037290 Mars-001 127296221-127311786 protein_coding
  ENSMUST00000128369 Mars-003 127308036-127308973 retained_intron
  ENSMUST00000134778 Mars-004 127296226-127297764 protein_coding
  ENSMUST00000139683 Mars-005 127296349-127297675 retained_intron
  ENSMUST00000145275 Mars-002 127296226-127311678 retained_intron
  ENSMUST00000171564 Mars-201 127296222-127311786 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037290ENSMUST00000134778ENSMUST00000145275ENSMUST00000171564
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037290 22.359±4.51 30.118±2.81 17.043±5.31 9.367±3.19 20.817±3.30 16.869±1.76 7.712±0.58 16.151±1.22 28.873±11.29 15.270±0.66 2.650±0.00 29.724±8.20 20.023±8.90 12.475±3.43
ENSMUST00000134778 N/A N/A N/A 31.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 53.988±21.21 N/A
ENSMUST00000145275 6.864±1.90 9.135±1.88 5.188±1.12 9.773±4.05 4.003±0.51 2.660±0.00 2.743±0.63 N/A 6.372±1.88 2.864±0.46 2.969±0.20 7.104±2.81 5.134±0.00 N/A
ENSMUST00000171564 N/A 23.140±7.14 N/A 4.860±0.09 6.304±1.00 N/A 4.903±1.13 N/A 8.099±0.00 N/A 17.160±1.80 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A8 CIL_0003A8_0002 CGP 10:127281956-127296288
CIL_0003A7 CIL_0003A7_0002 CGP 10:127290774-127311786
CIL_00039K CIL_00039K_0002 CGP 10:127296221-127329943

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004825 IEA methionine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006431 IEA methionyl-tRNA aminoacylation
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034396 mars methionine-tRNA synthetase protein_coding Danio_rerio
ENSG00000166986 MARS methionyl-tRNA synthetase protein_coding Homo_sapiens

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