C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | collagen, type V, alpha 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000145423  |
Col5a1-002 |
ENSMUSG00000026837 |
10090 | + |
2:28017441-28037015  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000152 | CIL_000152_0002 | CGP | 2:27676440-28039514 |
| CIL_0001EU | CIL_0001EU_0002 | CGP | 2:27886425-28084885 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001568 | IMP | blood vessel development |
| GO:0003007 | IGI | heart morphogenesis |
| GO:0005201 | IDA | extracellular matrix structural constituent |
| GO:0005515 | IPI | protein binding |
| GO:0005581 | IDA | collagen trimer |
| GO:0005604 | IDA | basement membrane |
| GO:0030199 | IMP | collagen fibril organization |
| GO:0031012 | IDA | extracellular matrix |
| GO:0035989 | IGI | tendon development |
| GO:0043588 | IMP | skin development |
| GO:0051128 | IMP | regulation of cellular component organization |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000371817
|
COL5A1-001 | protein_coding | Homo_sapiens | 0 | 1051 |
|
ENST00000371820
|
COL5A1-003 | protein_coding | Homo_sapiens | 0 | 662 |
|
ENST00000460264
|
COL5A1-002 | retained_intron | Homo_sapiens | 0 | 544 |
|
ENST00000465877
|
COL5A1-007 | retained_intron | Homo_sapiens | 0 | 407 |
|
ENST00000618395
|
COL5A1-201 | protein_coding | Homo_sapiens | 0 | 924 |
