C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 5 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145776 Hps5-004 ENSMUSG00000014418 10090 - 7:46760979-46795678 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000145776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000145776 2.096±0.49 1.146±0.00 1.966±0.09 1.278±0.14 1.724±0.48 2.850±0.41 0.532±0.10 2.629±0.94 0.955±0.12 2.247±0.52 0.600±0.13 1.700±0.46 2.792±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041D CIL_00041D_0003 CGP 7:46760466-46823800

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000349215 HPS5-001 protein_coding Homo_sapiens 0 1729
ENST00000352460 HPS5-006 processed_transcript Homo_sapiens 0 523
ENST00000396253 HPS5-002 protein_coding Homo_sapiens 0 1568
ENST00000399287 HPS5-004 retained_intron Homo_sapiens 0 298
ENST00000438420 HPS5-005 protein_coding Homo_sapiens 0 1568
ENST00000531848 HPS5-003 protein_coding Homo_sapiens 0 1589
ENST00000537258 HPS5-007 protein_coding Homo_sapiens 0 802
ENST00000543728 HPS5-010 processed_transcript Homo_sapiens 4.99997e-41 171
ENST00000544218 HPS5-009 protein_coding Homo_sapiens 0 198
ENST00000589545 HPS5-012 processed_transcript Homo_sapiens 1e-39 167

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